LOCUS       V046660                 9839 bp    DNA     circular SYN 01-JAN-1980
DEFINITION  synthetic circular DNA.
ACCESSION   V046660
VERSION     V046660
KEYWORDS    .
SOURCE      .
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     LTR             1..634
                     /note="3' long terminal repeat (LTR) from HIV-1"
                     /label="3' LTR"
     misc_feature    681..806
                     /note="packaging signal of human immunodeficiency virus
                     type 1"
                     /label="HIV-1 Ψ"
     misc_feature    1303..1536
                     /note="The Rev response element (RRE) of HIV-1 allows for
                     Rev-dependent mRNA export from the nucleus to the
                     cytoplasm."
                     /label="RRE"
     CDS             1721..1765
                     /codon_start=1
                     /note="recognized by the 2H10 single-chain llama nanobody"
                     /product="antigenic peptide corresponding to amino acids
                     655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik
                     et al., 2013)"
                     /transl_table=1
                     /translation="KNEQELLELDKWASL"
                     /label="gp41 peptide"
     misc_feature    2028..2143
                     /note="central polypurine tract and central termination
                     sequence of HIV-1 (lacking the first T)"
                     /label="cPPT/CTS"
     enhancer        2201..2504
                     /note="human cytomegalovirus immediate early enhancer"
                     /label="CMV enhancer"
     promoter        2505..2708
                     /note="human cytomegalovirus (CMV) immediate early
                     promoter"
                     /label="CMV promoter"
     regulatory      2820..2829
                     /note="vertebrate consensus sequence for strong initiation
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
                     /label="Kozak sequence"
     CDS             2829..2894
                     /codon_start=1
                     /product="three tandem FLAG® epitope tags, followed by an
                     enterokinase cleavage site"
                     /transl_table=1
                     /translation="DYKDHDGDYKDHDIDYKDDDDK"
                     /label="3xFLAG"
     CDS             2901..4595
                     /label="USP39(NM_006590)"
                     /note="USP39(NM_006590)"
                     /gene="USP39"
     promoter        4627..5126
                     /note="mouse phosphoglycerate kinase 1 promoter"
                     /label="PGK promoter"
     CDS             5147..5746
                     /codon_start=1
                     /gene="pac from Streptomyces alboniger"
                     /note="confers resistance to puromycin"
                     /product="puromycin N-acetyltransferase"
                     /transl_table=1
                     /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER
                     VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA
                     AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS
                     APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA*"
                     /label="PuroR"
     misc_feature    5760..6348
                     /note="woodchuck hepatitis virus&nbsp;posttranscriptional
                     regulatory element"
                     /label="WPRE"
     LTR             6555..7188
                     /note="3' long terminal repeat (LTR) from HIV-1"
                     /label="3' LTR"
     primer_bind     complement(7317..7333)
                     /note="common sequencing primer, one of multiple similar
                     variants"
                     /label="M13 rev"
     protein_bind    7341..7357
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to
                     inhibit transcription in E. coli. This inhibition can be
                     relieved by adding lactose or
                     isopropyl-β-D-thiogalactopyranoside (IPTG)."
                     /label="lac operator"
     promoter        complement(7365..7395)
                     /note="promoter for the E. coli lac operon"
                     /label="lac promoter"
     protein_bind    7410..7431
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence
                     of cAMP."
                     /label="CAP binding site"
     rep_origin      complement(7719..8307)
                     /direction=LEFT
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
                     replication"
                     /label="ori"
     CDS             complement(8478..9338)
                     /codon_start=1
                     /gene="bla"
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /product="β-lactamase"
                     /transl_table=1
                     /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY
                     SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR
                     WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS
                     ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA
                     SLIKHW*"
                     /label="AmpR"
     promoter        complement(9339..9443)
                     /gene="bla"
                     /label="AmpR promoter"
     polyA_signal    9491..9625
                     /note="SV40 polyadenylation signal"
                     /label="SV40 poly(A) signal"
ORIGIN
        1 tggaagggct aattcactcc caaagaagac aagatatcct tgatctgtgg atctaccaca
       61 cacaaggcta cttccctgat tagcagaact acacaccagg gccaggggtc agatatccac
      121 tgacctttgg atggtgctac aagctagtac cagttgagcc agataaggta gaagaggcca
      181 ataaaggaga gaacaccagc ttgttacacc ctgtgagcct gcatgggatg gatgacccgg
      241 agagagaagt gttagagtgg aggtttgaca gccgcctagc atttcatcac gtggcccgag
      301 agctgcatcc ggagtacttc aagaactgct gatatcgagc ttgctacaag ggactttccg
      361 ctggggactt tccagggagg cgtggcctgg gcgggactgg ggagtggcga gccctcagat
      421 cctgcatata agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga
      481 gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct
      541 tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact ctggtaacta gagatccctc
      601 agaccctttt agtcagtgtg gaaaatctct agcagtggcg cccgaacagg gacttgaaag
      661 cgaaagggaa accagaggag ctctctcgac gcaggactcg gcttgctgaa gcgcgcacgg
      721 caagaggcga ggggcggcga ctggtgagta cgccaaaaat tttgactagc ggaggctaga
      781 aggagagaga tgggtgcgag agcgtcagta ttaagcgggg gagaattaga tcgcgatggg
      841 aaaaaattcg gttaaggcca gggggaaaga aaaaatataa attaaaacat atagtatggg
      901 caagcaggga gctagaacga ttcgcagtta atcctggcct gttagaaaca tcagaaggct
      961 gtagacaaat actgggacag ctacaaccat cccttcagac aggatcagaa gaacttagat
     1021 cattatataa tacagtagca accctctatt gtgtgcatca aaggatagag ataaaagaca
     1081 ccaaggaagc tttagacaag atagaggaag agcaaaacaa aagtaagacc accgcacagc
     1141 aagcggccgg ccgctgatct tcagacctgg aggaggagat atgagggaca attggagaag
     1201 tgaattatat aaatataaag tagtaaaaat tgaaccatta ggagtagcac ccaccaaggc
     1261 aaagagaaga gtggtgcaga gagaaaaaag agcagtggga ataggagctt tgttccttgg
     1321 gttcttggga gcagcaggaa gcactatggg cgcagcgtca atgacgctga cggtacaggc
     1381 cagacaatta ttgtctggta tagtgcagca gcagaacaat ttgctgaggg ctattgaggc
     1441 gcaacagcat ctgttgcaac tcacagtctg gggcatcaag cagctccagg caagaatcct
     1501 ggctgtggaa agatacctaa aggatcaaca gctcctgggg atttggggtt gctctggaaa
     1561 actcatttgc accactgctg tgccttggaa tgctagttgg agtaataaat ctctggaaca
     1621 gatttggaat cacacgacct ggatggagtg ggacagagaa attaacaatt acacaagctt
     1681 aatacactcc ttaattgaag aatcgcaaaa ccagcaagaa aagaatgaac aagaattatt
     1741 ggaattagat aaatgggcaa gtttgtggaa ttggtttaac ataacaaatt ggctgtggta
     1801 tataaaatta ttcataatga tagtaggagg cttggtaggt ttaagaatag tttttgctgt
     1861 actttctata gtgaatagag ttaggcaggg atattcacca ttatcgtttc agacccacct
     1921 cccaaccccg aggggacccg acaggcccga aggaatagaa gaagaaggtg gagagagaga
     1981 cagagacaga tccattcgat tagtgaacgg atctcgacgg tatcgccttt aaaagaaaag
     2041 gggggattgg ggggtacagt gcaggggaaa gaatagtaga cataatagca acagacatac
     2101 aaactaaaga attacaaaaa caaattacaa aaattcaaaa ttttcgggtt tattacaggg
     2161 acagcagaga tccagtttat cgataagctt gggagttccg cgttacataa cttacggtaa
     2221 atggcccgcc tggctgaccg cccaacgacc cccgcccatt gacgtcaata atgacgtatg
     2281 ttcccatagt aacgccaata gggactttcc attgacgtca atgggtggag tatttacggt
     2341 aaactgccca cttggcagta catcaagtgt atcatatgcc aagtacgccc cctattgacg
     2401 tcaatgacgg taaatggccc gcctggcatt atgcccagta catgacctta tgggactttc
     2461 ctacttggca gtacatctac gtattagtca tcgctattac catggtgatg cggttttggc
     2521 agtacatcaa tgggcgtgga tagcggtttg actcacgggg atttccaagt ctccacccca
     2581 ttgacgtcaa tgggagtttg ttttggcacc aaaatcaacg ggactttcca aaatgtcgta
     2641 acaactccgc cccattgacg caaatgggcg gtaggcgtgt acggtgggag gtctatataa
     2701 gcagagctcg tttagtgaac cgtcagatcg cctggagacg ccatccacgc tgttttgacc
     2761 tccatagaag acaccgactc tactagagga tcgctagcgc taccggactc agatctcgag
     2821 ccaccatgga ctacaaagac catgacggtg attataaaga tcatgacatc gactacaagg
     2881 atgacgatga caaggaattc atgtccggcc ggtctaagcg ggagtctcgc ggttccactc
     2941 gcgggaagcg agagtctgag tcgcggggca gctccggtcg cgtcaagcgg gagcgagatc
     3001 gggagcggga gcctgaggcg gcgagctccc ggggcagccc tgtgcgcgtg aagcgggagt
     3061 tcgagccggc gagcgcgcgc gaggccccgg cttctgttgt cccgtttgtg cgggtgaagc
     3121 gggagcgcga ggtcgatgag gactcggagc ctgagcggga ggtgcgagca aagaatggcc
     3181 gagtggattc tgaggaccgg aggagccgcc actgcccgta cctggacacc attaacagga
     3241 gtgtgctgga ctttgacttt gagaaactgt gttctatctc cctctcacac atcaatgctt
     3301 atgcctgtct ggtgtgtggc aagtactttc aaggccgggg tttgaagtct cacgcctaca
     3361 ttcacagtgt ccagtttagc caccatgttt tcctcaacct ccacaccctc aagttttact
     3421 gccttccaga caactatgag atcatcgatt cctcattgga ggatatcacg tatgtgttga
     3481 agcccacttt cacaaagcag caaattgcaa acttggacaa gcaagccaaa ttgtcccggg
     3541 catatgatgg taccacttac ctgccgggta ttgtgggact gaataacata aaggccaatg
     3601 attatgccaa cgctgtcctt caggctctat ctaatgttcc tcctctccgg aactactttc
     3661 tggaagaaga caattataag aacatcaaac gtcctccagg ggatatcatg ttcttgttgg
     3721 tccagcgttt tggagagctg atgagaaagc tctggaaccc tcgaaatttc aaggcacatg
     3781 tgtctcccca tgagatgctt caggcagttg tactttgcag taagaagact tttcagatca
     3841 ccaaacaagg agatggcgtt gactttctgt cttggtttct gaatgctctg cactcagctc
     3901 tggggggcac aaagaagaaa aagaagacta ttgtgactga tgttttccag gggtccatga
     3961 ggatcttcac taaaaagctt ccccatcctg atctgccagc agaagaaaaa gagcagttgc
     4021 tccataatga cgagtaccag gagacaatgg tggagtccac ttttatgtac ctgacgctgg
     4081 accttcctac tgcccccctc tacaaggacg agaaggagca gctcatcatt ccccaagtgc
     4141 cactcttcaa catcctggct aagttcaatg gcatcactga gaaggaatat aagacttaca
     4201 aggagaactt tctgaagcgc ttccagctta ccaagttgcc tccatatcta atcttttgta
     4261 tcaagagatt cactaagaac aacttctttg ttgagaagaa tccaactatt gtcaatttcc
     4321 ctattacaaa tgtggatctg agagaatact tgtctgaaga agtacaagca gtacacaaga
     4381 ataccaccta tgacctcatt gccaacatcg tgcatgacgg caagccctcc gagggctcct
     4441 accggatcca cgtgcttcat catgggacag gcaaatggta tgaattacaa gacctccagg
     4501 tgactgacat ccttccccag atgatcacac tgtcagaggc ttacattcag atttggaaga
     4561 ggcgagataa tgatgaaacc aaccagcagg gggcttgagg atcccgcgac tctagataat
     4621 tctaccgggt aggggaggcg cttttcccaa ggcagtctgg agcatgcgct ttagcagccc
     4681 cgctgggcac ttggcgctac acaagtggcc tctggcctcg cacacattcc acatccaccg
     4741 gtaggcgcca accggctccg ttctttggtg gccccttcgc gccaccttct actcctcccc
     4801 tagtcaggaa gttccccccc gccccgcagc tcgcgtcgtg caggacgtga caaatggaag
     4861 tagcacgtct cactagtctc gtgcagatgg acagcaccgc tgagcaatgg aagcgggtag
     4921 gcctttgggg cagcggccaa tagcagcttt gctccttcgc tttctgggct cagaggctgg
     4981 gaaggggtgg gtccgggggc gggctcaggg gcgggctcag gggcggggcg ggcgcccgaa
     5041 ggtcctccgg aggcccggca ttctgcacgc ttcaaaagcg cacgtctgcc gcgctgttct
     5101 cctcttcctc atctccgggc ctttcgacct gcagcccaag cttaccatga ccgagtacaa
     5161 gcccacggtg cgcctcgcca cccgcgacga cgtccccagg gccgtacgca ccctcgccgc
     5221 cgcgttcgcc gactaccccg ccacgcgcca caccgtcgat ccggaccgcc acatcgagcg
     5281 ggtcaccgag ctgcaagaac tcttcctcac gcgcgtcggg ctcgacatcg gcaaggtgtg
     5341 ggtcgcggac gacggcgccg cggtggcggt ctggaccacg ccggagagcg tcgaagcggg
     5401 ggcggtgttc gccgagatcg gcccgcgcat ggccgagttg agcggttccc ggctggccgc
     5461 gcagcaacag atggaaggcc tcctggcgcc gcaccggccc aaggagcccg cgtggttcct
     5521 ggccaccgtc ggcgtctcgc ccgaccacca gggcaagggt ctgggcagcg ccgtcgtgct
     5581 ccccggagtg gaggcggccg agcgcgccgg ggtgcccgcc ttcctggaga cctccgcgcc
     5641 ccgcaacctc cccttctacg agcggctcgg cttcaccgtc accgccgacg tcgaggtgcc
     5701 cgaaggaccg cgcacctggt gcatgacccg caagcccggt gcctgaccgc gtctggaaca
     5761 atcaacctct ggattacaaa atttgtgaaa gattgactgg tattcttaac tatgttgctc
     5821 cttttacgct atgtggatac gctgctttaa tgcctttgta tcatgctatt gcttcccgta
     5881 tggctttcat tttctcctcc ttgtataaat cctggttgct gtctctttat gaggagttgt
     5941 ggcccgttgt caggcaacgt ggcgtggtgt gcactgtgtt tgctgacgca acccccactg
     6001 gttggggcat tgccaccacc tgtcagctcc tttccgggac tttcgctttc cccctcccta
     6061 ttgccacggc ggaactcatc gccgcctgcc ttgcccgctg ctggacaggg gctcggctgt
     6121 tgggcactga caattccgtg gtgttgtcgg ggaagctgac gtcctttcca tggctgctcg
     6181 cctgtgttgc cacctggatt ctgcgcggga cgtccttctg ctacgtccct tcggccctca
     6241 atccagcgga ccttccttcc cgcggcctgc tgccggctct gcggcctctt ccgcgtcttc
     6301 gccttcgccc tcagacgagt cggatctccc tttgggccgc ctccccgcct ggaattaatt
     6361 ctgcagtcga gacctagaaa aacatggagc aatcacaagt agcaatacag cagctaccaa
     6421 tgctgattgt gcctggctag aagcacaaga ggaggaggag gtgggttttc cagtcacacc
     6481 tcaggtacct ttaagaccaa tgacttacaa ggcagctgta gatcttagcc actttttaaa
     6541 agaaaagagg ggactggaag ggctaattca ctcccaacga agacaagata tccttgatct
     6601 gtggatctac cacacacaag gctacttccc tgattagcag aactacacac cagggccagg
     6661 ggtcagatat ccactgacct ttggatggtg ctacaagcta gtaccagttg agccagataa
     6721 ggtagaagag gccaataaag gagagaacac cagcttgtta caccctgtga gcctgcatgg
     6781 gatggatgac ccggagagag aagtgttaga gtggaggttt gacagccgcc tagcatttca
     6841 tcacgtggcc cgagagctgc atccggagta cttcaagaac tgctgatatc gagcttgcta
     6901 caagggactt tccgctgggg actttccagg gaggcgtggc ctgggcggga ctggggagtg
     6961 gcgagccctc agatcctgca tataagcagc tgctttttgc ctgtactggg tctctctggt
     7021 tagaccagat ctgagcctgg gagctctctg gctaactagg gaacccactg cttaagcctc
     7081 aataaagctt gccttgagtg cttcaagtag tgtgtgcccg tctgttgtgt gactctggta
     7141 actagagatc cctcagaccc ttttagtcag tgtggaaaat ctctagcagt agtagttcat
     7201 gtcatcttat tattcagtat ttataacttg caaagaaatg aatatcagag agtgagaggc
     7261 cttgacattg ctagcgtttt accgtcgacc tctagctaga gcttggcgta atcatggtca
     7321 tagctgtttc ctgtgtgaaa ttgttatccg ctcacaattc cacacaacat acgagccgga
     7381 agcataaagt gtaaagcctg gggtgcctaa tgagtgagct aactcacatt aattgcgttg
     7441 cgctcactgc ccgctttcca gtcgggaaac ctgtcgtgcc agctgcatta atgaatcggc
     7501 caacgcgcgg ggagaggcgg tttgcgtatt gggcgctctt ccgcttcctc gctcactgac
     7561 tcgctgcgct cggtcgttcg gctgcggcga gcggtatcag ctcactcaaa ggcggtaata
     7621 cggttatcca cagaatcagg ggataacgca ggaaagaaca tgtgagcaaa aggccagcaa
     7681 aaggccagga accgtaaaaa ggccgcgttg ctggcgtttt tccataggct ccgcccccct
     7741 gacgagcatc acaaaaatcg acgctcaagt cagaggtggc gaaacccgac aggactataa
     7801 agataccagg cgtttccccc tggaagctcc ctcgtgcgct ctcctgttcc gaccctgccg
     7861 cttaccggat acctgtccgc ctttctccct tcgggaagcg tggcgctttc tcatagctca
     7921 cgctgtaggt atctcagttc ggtgtaggtc gttcgctcca agctgggctg tgtgcacgaa
     7981 ccccccgttc agcccgaccg ctgcgcctta tccggtaact atcgtcttga gtccaacccg
     8041 gtaagacacg acttatcgcc actggcagca gccactggta acaggattag cagagcgagg
     8101 tatgtaggcg gtgctacaga gttcttgaag tggtggccta actacggcta cactagaaga
     8161 acagtatttg gtatctgcgc tctgctgaag ccagttacct tcggaaaaag agttggtagc
     8221 tcttgatccg gcaaacaaac caccgctggt agcggtggtt tttttgtttg caagcagcag
     8281 attacgcgca gaaaaaaagg atctcaagaa gatcctttga tcttttctac ggggtctgac
     8341 gctcagtgga acgaaaactc acgttaaggg attttggtca tgagattatc aaaaaggatc
     8401 ttcacctaga tccttttaaa ttaaaaatga agttttaaat caatctaaag tatatatgag
     8461 taaacttggt ctgacagtta ccaatgctta atcagtgagg cacctatctc agcgatctgt
     8521 ctatttcgtt catccatagt tgcctgactc cccgtcgtgt agataactac gatacgggag
     8581 ggcttaccat ctggccccag tgctgcaatg ataccgcgag acccacgctc accggctcca
     8641 gatttatcag caataaacca gccagccgga agggccgagc gcagaagtgg tcctgcaact
     8701 ttatccgcct ccatccagtc tattaattgt tgccgggaag ctagagtaag tagttcgcca
     8761 gttaatagtt tgcgcaacgt tgttgccatt gctacaggca tcgtggtgtc acgctcgtcg
     8821 tttggtatgg cttcattcag ctccggttcc caacgatcaa ggcgagttac atgatccccc
     8881 atgttgtgca aaaaagcggt tagctccttc ggtcctccga tcgttgtcag aagtaagttg
     8941 gccgcagtgt tatcactcat ggttatggca gcactgcata attctcttac tgtcatgcca
     9001 tccgtaagat gcttttctgt gactggtgag tactcaacca agtcattctg agaatagtgt
     9061 atgcggcgac cgagttgctc ttgcccggcg tcaatacggg ataataccgc gccacatagc
     9121 agaactttaa aagtgctcat cattggaaaa cgttcttcgg ggcgaaaact ctcaaggatc
     9181 ttaccgctgt tgagatccag ttcgatgtaa cccactcgtg cacccaactg atcttcagca
     9241 tcttttactt tcaccagcgt ttctgggtga gcaaaaacag gaaggcaaaa tgccgcaaaa
     9301 aagggaataa gggcgacacg gaaatgttga atactcatac tcttcctttt tcaatattat
     9361 tgaagcattt atcagggtta ttgtctcatg agcggataca tatttgaatg tatttagaaa
     9421 aataaacaaa taggggttcc gcgcacattt ccccgaaaag tgccacctga cgtcgacgga
     9481 tcgggagatc aacttgttta ttgcagctta taatggttac aaataaagca atagcatcac
     9541 aaatttcaca aataaagcat ttttttcact gcattctagt tgtggtttgt ccaaactcat
     9601 caatgtatct tatcatgtct ggatcaactg gataactcaa gctaaccaaa atcatcccaa
     9661 acttcccacc ccatacccta ttaccactgc caattacctg tggtttcatt tactctaaac
     9721 ctgtgattcc tctgaattat tttcatttta aagaaattgt atttgttaaa tatgtactac
     9781 aaacttagta gtttttaaag aaattgtatt tgttaaatat gtactacaaa cttagtagt
//
