LOCUS V041700 8098 bp DNA circular SYN 01-JAN-1980 DEFINITION synthetic circular DNA. ACCESSION V041700 VERSION V041700 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers LTR 234..414 /note="truncated 5' long terminal repeat (LTR) from HIV-1" /label="5' LTR (truncated)" misc_feature 458..583 /note="packaging signal of human immunodeficiency virus type 1" /label="HIV-1 Ψ" misc_feature 1076..1309 /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." /label="RRE" CDS 1493..1537 /codon_start=1 /note="recognized by the 2H10 single-chain llama nanobody" /product="antigenic peptide corresponding to amino acids 655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik et al., 2013)" /transl_table=1 /translation="KNEQELLELDKWASL" /label="gp41 peptide" misc_feature 1804..1920 /note="central polypurine tract and central termination sequence of HIV-1" /label="cPPT/CTS" promoter 2010..2213 /note="human cytomegalovirus (CMV) immediate early promoter" /label="CMV promoter" CDS 2302..2952 /label="PRRX1(NM_006902)" /note="PRRX1(NM_006902)" /gene="PRRX1" CDS 2959..3024 /codon_start=1 /product="three tandem FLAG® epitope tags, followed by an enterokinase cleavage site" /transl_table=1 /translation="DYKDHDGDYKDHDIDYKDDDDK" /label="3xFLAG" promoter 3068..3279 /note="core promoter for human elongation factor EF-1α" /label="EF-1α core promoter" LTR 3292..3560 /note="truncated 5' long terminal repeat (LTR) from human T-cell leukemia virus (HTLV) type 1" /label="5' LTR (truncated)" CDS 3587..4186 /codon_start=1 /gene="pac from Streptomyces alboniger" /note="confers resistance to puromycin" /product="puromycin N-acetyltransferase" /transl_table=1 /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA*" /label="PuroR" misc_feature 4193..4781 /note="woodchuck hepatitis virus posttranscriptional regulatory element" /label="WPRE" LTR 4855..5088 /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" /label="3' LTR (ΔU3)" polyA_signal 5160..5281 /note="SV40 polyadenylation signal" /label="SV40 poly(A) signal" rep_origin 5300..5435 /note="SV40 origin of replication" /label="SV40 ori" primer_bind complement(5473..5489) /note="common sequencing primer, one of multiple similar variants" /label="M13 rev" protein_bind 5497..5513 /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG)." /label="lac operator" promoter complement(5521..5551) /note="promoter for the E. coli lac operon" /label="lac promoter" protein_bind 5566..5587 /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." /label="CAP binding site" rep_origin complement(5875..6463) /direction=LEFT /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" /label="ori" CDS complement(6634..7494) /codon_start=1 /gene="bla" /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /product="β-lactamase" /transl_table=1 /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA SLIKHW*" /label="AmpR" promoter complement(7495..7599) /gene="bla" /label="AmpR promoter" primer_bind 8073..8089 /note="common sequencing primer, one of multiple similar variants" /label="M13 fwd" ORIGIN 1 acgcgtgtag tcttatgcaa tactcttgta gtcttgcaac atggtaacga tgagttagca 61 acatgcctta caaggagaga aaaagcaccg tgcatgccga ttggtggaag taaggtggta 121 cgatcgtgcc ttattaggaa ggcaacagac gggtctgaca tggattggac gaaccactga 181 attgccgcat tgcagagata ttgtatttaa gtgcctagct cgatacaata aacgggtctc 241 tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta 301 agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact 361 ctggtaacta gagatccctc agaccctttt agtcagtgtg gaaaatctct agcagtggcg 421 cccgaacagg gacctgaaag cgaaagggaa accagagctc tctcgacgca ggactcggct 481 tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt 541 gactagcgga ggctagaagg agagagatgg gtgcgagagc gtcagtatta agcgggggag 601 aattagatcg cgatgggaaa aaattcggtt aaggccaggg ggaaagaaaa aatataaatt 661 aaaacatata gtatgggcaa gcagggagct agaacgattc gcagttaatc ctggcctgtt 721 agaaacatca gaaggctgta gacaaatact gggacagcta caaccatccc ttcagacagg 781 atcagaagaa cttagatcat tatataatac agtagcaacc ctctattgtg tgcatcaaag 841 gatagagata aaagacacca aggaagcttt agacaagata gaggaagagc aaaacaaaag 901 taagaccacc gcacagcaag cggccactga tcttcagacc tggaggagga gatatgaggg 961 acaattggag aagtgaatta tataaatata aagtagtaaa aattgaacca ttaggagtag 1021 cacccaccaa ggcaaagaga agagtggtgc agagagaaaa aagagcagtg ggaataggag 1081 ctttgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcc tcaatgacgc 1141 tgacggtaca ggccagacaa ttattgtctg gtatagtgca gcagcagaac aatttgctga 1201 gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc aagcagctcc 1261 aggcaagaat cctggctgtg gaaagatacc taaaggatca acagctcctg gggatttggg 1321 gttgctctgg aaaactcatt tgcaccactg ctgtgccttg gaatgctagt tggagtaata 1381 aatctctgga acagattgga atcacacgac ctggatggag tgggacagag aaattaacaa 1441 ttacacaagc ttaatacact ccttaattga agaatcgcaa aaccagcaag aaaagaatga 1501 acaagaatta ttggaattag ataaatgggc aagtttgtgg aattggttta acataacaaa 1561 ttggctgtgg tatataaaat tattcataat gatagtagga ggcttggtag gtttaagaat 1621 agtttttgct gtactttcta tagtgaatag agttaggcag ggatattcac cattatcgtt 1681 tcagacccac ctcccaaccc cgaggggacc cgacaggccc gaaggaatag aagaagaagg 1741 tggagagaga gacagagaca gatccattcg attagtgaac ggatctcgac ggtatcggtt 1801 aacttttaaa agaaaagggg ggattggggg gtacagtgca ggggaaagaa tagtagacat 1861 aatagcaaca gacatacaaa ctaaagaatt acaaaaacaa attacaaaat tcaaaatttt 1921 atcgatacta gtattatgcc cagtacatga ccttatggga ctttcctact tggcagtaca 1981 tctacgtatt agtcatcgct attaccatgg tgatgcggtt ttggcagtac atcaatgggc 2041 gtggatagcg gtttgactca cggggatttc caagtctcca ccccattgac gtcaatggga 2101 gtttgttttg gcaccaaaat caacgggact ttccaaaatg tcgtaacaac tccgccccat 2161 tgacgcaaat gggcggtagg cgtgtacggt gggaggttta tataagcaga gctcgtttag 2221 tgaaccgtca gatcgcctgg agacgccatc cacgctgttt tgacctccat agaagattct 2281 agagctagcg aattcgccac catgacctcc agctacgggc acgttctgga gcggcaaccg 2341 gcgctgggcg gccgcttgga cagcccgggc aacctcgaca ccctgcaggc gaaaaagaac 2401 ttctccgtca gtcacctgct agacctggag gaagccgggg acatggtggc ggcacaggcg 2461 gatgagaacg tgggcgaggc tggccggagc ctgctggagt cgccgggact caccagcggc 2521 agcgacaccc cgcagcagga caatgaccag ctgaactcag aagaaaaaaa gaagagaaag 2581 cagcgaagga ataggacaac cttcaatagc agccagctgc aggctttgga gcgtgtcttt 2641 gagcggacac actatcctga tgcttttgtg cgagaagacc ttgcccgccg ggtgaacctc 2701 accgaggcga gagtgcaggt gtggtttcag aaccgaagag ccaagttccg caggaatgag 2761 agagccatgc tagccaataa aaacgcttcc ctcctcaaat cctactcagg agacgtgact 2821 gctgtggagc agcccatcgt acctcgtcct gctccgagac ccaccgatta tctctcctgg 2881 gggacagcgt ctccgtacag atcctcgtcc ctcccaagat gttgtttaca cgaggggctt 2941 cataacggat tcggatccga ctacaaagac catgacggtg attataaaga tcatgacatc 3001 gactacaagg atgacgatga caagtagcgg ccgcgaagga tctgcgatcg ctccggtgcc 3061 cgtcagtggg cagagcgcac atcgcccaca gtccccgaga agttgggggg aggggtcggc 3121 aattgaacgg gtgcctagag aaggtggcgc ggggtaaact gggaaagtga tgtcgtgtac 3181 tggctccgcc tttttcccga gggtggggga gaaccgtata taagtgcagt agtcgccgtg 3241 aacgttcttt ttcgcaacgg gtttgccgcc agaacacagc tgaagcttcg aggggctcgc 3301 atctctcctt cacgcgcccg ccgccctacc tgaggccgcc atccacgccg gttgagtcgc 3361 gttctgccgc ctcccgcctg tggtgcctcc tgaactgcgt ccgccgtcta ggtaagttta 3421 aagctcaggt cgagaccggg cctttgtccg gcgctccctt ggagcctacc tagactcagc 3481 cggctctcca cgctttgcct gaccctgctt gctcaactct acgtctttgt ttcgttttct 3541 gttctgcgcc gttacagatc caagctgtga ccggcgccta cgctagatga ccgagtacaa 3601 gcccacggtg cgcctcgcca cccgcgacga cgtcccccgg gccgtacgca ccctcgccgc 3661 cgcgttcgcc gactaccccg ccacgcgcca caccgtcgac ccggaccgcc acatcgagcg 3721 ggtcaccgag ctgcaagaac tcttcctcac gcgcgtcggg ctcgacatcg gcaaggtgtg 3781 ggtcgcggac gacggcgccg cggtggcggt ctggaccacg ccggagagcg tcgaagcggg 3841 ggcggtgttc gccgagatcg gcccgcgcat ggccgagttg agcggttccc ggctggccgc 3901 gcagcaacag atggaaggcc tcctggcgcc gcaccggccc aaggagcccg cgtggttcct 3961 ggccaccgtc ggcgtctcgc ccgaccacca gggcaagggt ctgggcagcg ccgtcgtgct 4021 ccccggagtg gaggcggccg agcgcgccgg ggtgcccgcc ttcctggaga cctccgcgcc 4081 ccgcaacctc cccttctacg agcggctcgg cttcaccgtc accgccgacg tcgaggtgcc 4141 cgaaggaccg cgcacctggt gcatgacccg caagcccggt gcctgagtcg acaatcaacc 4201 tctggattac aaaatttgtg aaagattgac tggtattctt aactatgttg ctccttttac 4261 gctatgtgga tacgctgctt taatgccttt gtatcatgct attgcttccc gtatggcttt 4321 cattttctcc tccttgtata aatcctggtt gctgtctctt tatgaggagt tgtggcccgt 4381 tgtcaggcaa cgtggcgtgg tgtgcactgt gtttgctgac gcaaccccca ctggttgggg 4441 cattgccacc acctgtcagc tcctttccgg gactttcgct ttccccctcc ctattgccac 4501 ggcggaactc atcgccgcct gccttgcccg ctgctggaca ggggctcggc tgttgggcac 4561 tgacaattcc gtggtgttgt cggggaaatc atcgtccttt ccttggctgc tcgcctgtgt 4621 tgccacctgg attctgcgcg ggacgtcctt ctgctacgtc ccttcggccc tcaatccagc 4681 ggaccttcct tcccgcggcc tgctgccggc tctgcggcct cttccgcgtc ttcgccttcg 4741 ccctcagacg agtcggatct ccctttgggc cgcctccccg cctggtacct ttaagaccaa 4801 tgacttacaa ggcagctgta gatcttagcc actttttaaa agaaaagggg ggactggaag 4861 ggctaattca ctcccaacga aaataagatc tgctttttgc ttgtactggg tctctctggt 4921 tagaccagat ctgagcctgg gagctctctg gctaactagg gaacccactg cttaagcctc 4981 aataaagctt gccttgagtg cttcaagtag tgtgtgcccg tctgttgtgt gactctggta 5041 actagagatc cctcagaccc ttttagtcag tgtggaaaat ctctagcagt agtagttcat 5101 gtcatcttat tattcagtat ttataacttg caaagaaatg aatatcagag agtgagagga 5161 acttgtttat tgcagcttat aatggttaca aataaagcaa tagcatcaca aatttcacaa 5221 ataaagcatt tttttcactg cattctagtt gtggtttgtc caaactcatc aatgtatctt 5281 atcatgtctg gctctagcta tcccgcccct aactccgccc agttccgccc attctccgcc 5341 ccatggctga ctaatttttt ttatttatgc agaggccgag gccgcctcgg cctctgagct 5401 attccagaag tagtgaggag gcttttttgg aggcctagac ttttgcagag acggcccaaa 5461 ttcgtaatca tggtcatagc tgtttcctgt gtgaaattgt tatccgctca caattccaca 5521 caacatacga gccggaagca taaagtgtaa agcctggggt gcctaatgag tgagctaact 5581 cacattaatt gcgttgcgct cactgcccgc tttccagtcg ggaaacctgt cgtgccagct 5641 gcattaatga atcggccaac gcgcggggag aggcggtttg cgtattgggc gctcttccgc 5701 ttcctcgctc actgactcgc tgcgctcggt cgttcggctg cggcgagcgg tatcagctca 5761 ctcaaaggcg gtaatacggt tatccacaga atcaggggat aacgcaggaa agaacatgtg 5821 agcaaaaggc cagcaaaagg ccaggaaccg taaaaaggcc gcgttgctgg cgtttttcca 5881 taggctccgc ccccctgacg agcatcacaa aaatcgacgc tcaagtcaga ggtggcgaaa 5941 cccgacagga ctataaagat accaggcgtt tccccctgga agctccctcg tgcgctctcc 6001 tgttccgacc ctgccgctta ccggatacct gtccgccttt ctcccttcgg gaagcgtggc 6061 gctttctcat agctcacgct gtaggtatct cagttcggtg taggtcgttc gctccaagct 6121 gggctgtgtg cacgaacccc ccgttcagcc cgaccgctgc gccttatccg gtaactatcg 6181 tcttgagtcc aacccggtaa gacacgactt atcgccactg gcagcagcca ctggtaacag 6241 gattagcaga gcgaggtatg taggcggtgc tacagagttc ttgaagtggt ggcctaacta 6301 cggctacact agaaggacag tatttggtat ctgcgctctg ctgaagccag ttaccttcgg 6361 aaaaagagtt ggtagctctt gatccggcaa acaaaccacc gctggtagcg gtggtttttt 6421 tgtttgcaag cagcagatta cgcgcagaaa aaaaggatct caagaagatc ctttgatctt 6481 ttctacgggg tctgacgctc agtggaacga aaactcacgt taagggattt tggtcatgag 6541 attatcaaaa aggatcttca cctagatcct tttaaattaa aaatgaagtt ttaaatcaat 6601 ctaaagtata tatgagtaaa cttggtctga cagttaccaa tgcttaatca gtgaggcacc 6661 tatctcagcg atctgtctat ttcgttcatc catagttgcc tgactccccg tcgtgtagat 6721 aactacgata cgggagggct taccatctgg ccccagtgct gcaatgatac cgcgagaccc 6781 acgctcaccg gctccagatt tatcagcaat aaaccagcca gccggaaggg ccgagcgcag 6841 aagtggtcct gcaactttat ccgcctccat ccagtctatt aattgttgcc gggaagctag 6901 agtaagtagt tcgccagtta atagtttgcg caacgttgtt gccattgcta caggcatcgt 6961 ggtgtcacgc tcgtcgtttg gtatggcttc attcagctcc ggttcccaac gatcaaggcg 7021 agttacatga tcccccatgt tgtgcaaaaa agcggttagc tccttcggtc ctccgatcgt 7081 tgtcagaagt aagttggccg cagtgttatc actcatggtt atggcagcac tgcataattc 7141 tcttactgtc atgccatccg taagatgctt ttctgtgact ggtgagtact caaccaagtc 7201 attctgagaa tagtgtatgc ggcgaccgag ttgctcttgc ccggcgtcaa tacgggataa 7261 taccgcgcca catagcagaa ctttaaaagt gctcatcatt ggaaaacgtt cttcggggcg 7321 aaaactctca aggatcttac cgctgttgag atccagttcg atgtaaccca ctcgtgcacc 7381 caactgatct tcagcatctt ttactttcac cagcgtttct gggtgagcaa aaacaggaag 7441 gcaaaatgcc gcaaaaaagg gaataagggc gacacggaaa tgttgaatac tcatactctt 7501 cctttttcaa tattattgaa gcatttatca gggttattgt ctcatgagcg gatacatatt 7561 tgaatgtatt tagaaaaata aacaaatagg ggttccgcgc acatttcccc gaaaagtgcc 7621 acctgacgtc taagaaacca ttattatcat gacattaacc tataaaaata ggcgtatcac 7681 gaggcccttt cgtctcgcgc gtttcggtga tgacggtgaa aacctctgac acatgcagct 7741 cccggagacg gtcacagctt gtctgtaagc ggatgccggg agcagacaag cccgtcaggg 7801 cgcgtcagcg ggtgttggcg ggtgtcgggg ctggcttaac tatgcggcat cagagcagat 7861 tgtactgaga gtgcaccata tgcggtgtga aataccgcac agatgcgtaa ggagaaaata 7921 ccgcatcagg cgccattcgc cattcaggct gcgcaactgt tgggaagggc gatcggtgcg 7981 ggcctcttcg ctattacgcc agctggcgaa agggggatgt gctgcaaggc gattaagttg 8041 ggtaacgcca gggttttccc agtcacgacg ttgtaaaacg acggccagtg ccaagctg //