LOCUS V041453 9008 bp DNA circular SYN 01-JAN-1980 DEFINITION synthetic circular DNA. ACCESSION V041453 VERSION V041453 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers LTR 234..414 /note="truncated 5' long terminal repeat (LTR) from HIV-1" /label="5' LTR (truncated)" misc_feature 458..583 /note="packaging signal of human immunodeficiency virus type 1" /label="HIV-1 Ψ" misc_feature 1076..1309 /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." /label="RRE" CDS 1493..1537 /codon_start=1 /note="recognized by the 2H10 single-chain llama nanobody" /product="antigenic peptide corresponding to amino acids 655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik et al., 2013)" /transl_table=1 /translation="KNEQELLELDKWASL" /label="gp41 peptide" misc_feature 1804..1920 /note="central polypurine tract and central termination sequence of HIV-1" /label="cPPT/CTS" promoter 2010..2213 /note="human cytomegalovirus (CMV) immediate early promoter" /label="CMV promoter" CDS 2302..3699 /label="EED(NM_001308007)" /note="EED(NM_001308007)" /gene="EED" CDS 3706..3732 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" promoter 3777..3988 /note="core promoter for human elongation factor EF-1α" /label="EF-1α core promoter" LTR 4001..4269 /note="truncated 5' long terminal repeat (LTR) from human T-cell leukemia virus (HTLV) type 1" /label="5' LTR (truncated)" CDS 4302..5096 /codon_start=1 /gene="aph(3')-II (or nptII)" /note="confers resistance to neomycin, kanamycin, and G418 (Geneticin®)" /product="aminoglycoside phosphotransferase from Tn5" /transl_table=1 /translation="MAEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ GLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF*" /label="NeoR/KanR" misc_feature 5103..5691 /note="woodchuck hepatitis virus posttranscriptional regulatory element" /label="WPRE" LTR 5765..5998 /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" /label="3' LTR (ΔU3)" polyA_signal 6070..6191 /note="SV40 polyadenylation signal" /label="SV40 poly(A) signal" rep_origin 6210..6345 /note="SV40 origin of replication" /label="SV40 ori" primer_bind complement(6383..6399) /note="common sequencing primer, one of multiple similar variants" /label="M13 rev" protein_bind 6407..6423 /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG)." /label="lac operator" promoter complement(6431..6461) /note="promoter for the E. coli lac operon" /label="lac promoter" protein_bind 6476..6497 /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." /label="CAP binding site" rep_origin complement(6785..7373) /direction=LEFT /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" /label="ori" CDS complement(7544..8404) /codon_start=1 /gene="bla" /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /product="β-lactamase" /transl_table=1 /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA SLIKHW*" /label="AmpR" promoter complement(8405..8509) /gene="bla" /label="AmpR promoter" primer_bind 8983..8999 /note="common sequencing primer, one of multiple similar variants" /label="M13 fwd" ORIGIN 1 acgcgtgtag tcttatgcaa tactcttgta gtcttgcaac atggtaacga tgagttagca 61 acatgcctta caaggagaga aaaagcaccg tgcatgccga ttggtggaag taaggtggta 121 cgatcgtgcc ttattaggaa ggcaacagac gggtctgaca tggattggac gaaccactga 181 attgccgcat tgcagagata ttgtatttaa gtgcctagct cgatacaata aacgggtctc 241 tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta 301 agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact 361 ctggtaacta gagatccctc agaccctttt agtcagtgtg gaaaatctct agcagtggcg 421 cccgaacagg gacctgaaag cgaaagggaa accagagctc tctcgacgca ggactcggct 481 tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt 541 gactagcgga ggctagaagg agagagatgg gtgcgagagc gtcagtatta agcgggggag 601 aattagatcg cgatgggaaa aaattcggtt aaggccaggg ggaaagaaaa aatataaatt 661 aaaacatata gtatgggcaa gcagggagct agaacgattc gcagttaatc ctggcctgtt 721 agaaacatca gaaggctgta gacaaatact gggacagcta caaccatccc ttcagacagg 781 atcagaagaa cttagatcat tatataatac agtagcaacc ctctattgtg tgcatcaaag 841 gatagagata aaagacacca aggaagcttt agacaagata gaggaagagc aaaacaaaag 901 taagaccacc gcacagcaag cggccactga tcttcagacc tggaggagga gatatgaggg 961 acaattggag aagtgaatta tataaatata aagtagtaaa aattgaacca ttaggagtag 1021 cacccaccaa ggcaaagaga agagtggtgc agagagaaaa aagagcagtg ggaataggag 1081 ctttgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcc tcaatgacgc 1141 tgacggtaca ggccagacaa ttattgtctg gtatagtgca gcagcagaac aatttgctga 1201 gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc aagcagctcc 1261 aggcaagaat cctggctgtg gaaagatacc taaaggatca acagctcctg gggatttggg 1321 gttgctctgg aaaactcatt tgcaccactg ctgtgccttg gaatgctagt tggagtaata 1381 aatctctgga acagattgga atcacacgac ctggatggag tgggacagag aaattaacaa 1441 ttacacaagc ttaatacact ccttaattga agaatcgcaa aaccagcaag aaaagaatga 1501 acaagaatta ttggaattag ataaatgggc aagtttgtgg aattggttta acataacaaa 1561 ttggctgtgg tatataaaat tattcataat gatagtagga ggcttggtag gtttaagaat 1621 agtttttgct gtactttcta tagtgaatag agttaggcag ggatattcac cattatcgtt 1681 tcagacccac ctcccaaccc cgaggggacc cgacaggccc gaaggaatag aagaagaagg 1741 tggagagaga gacagagaca gatccattcg attagtgaac ggatctcgac ggtatcggtt 1801 aacttttaaa agaaaagggg ggattggggg gtacagtgca ggggaaagaa tagtagacat 1861 aatagcaaca gacatacaaa ctaaagaatt acaaaaacaa attacaaaat tcaaaatttt 1921 atcgatacta gtattatgcc cagtacatga ccttatggga ctttcctact tggcagtaca 1981 tctacgtatt agtcatcgct attaccatgg tgatgcggtt ttggcagtac atcaatgggc 2041 gtggatagcg gtttgactca cggggatttc caagtctcca ccccattgac gtcaatggga 2101 gtttgttttg gcaccaaaat caacgggact ttccaaaatg tcgtaacaac tccgccccat 2161 tgacgcaaat gggcggtagg cgtgtacggt gggaggttta tataagcaga gctcgtttag 2221 tgaaccgtca gatcgcctgg agacgccatc cacgctgttt tgacctccat agaagattct 2281 agagctagcg aattcgccac catgtccgag agggaagtgt cgactgcgcc ggcgggaaca 2341 gacatgcctg cggccaagaa gcagaagctg agcagtgacg agaacagcaa tccagacctc 2401 tctggagacg agaatgatga cgctgtcagt atagaaagtg gtacaaacac tgaacgccct 2461 gatacaccta caaacacgcc aaatgcacct ggaaggaaaa gttggggaaa gggaaaatgg 2521 aagtcaaaga aatgcaaata ttctttcaaa tgtgtaaata gtctcaagga agatcataac 2581 caaccattgt ttggagttca gtttaactgg cacagtaaag aaggagatcc attagtgttt 2641 gcaactgtag gaagcaacag agttaccttg tatgaatgtc attcacaagg agaaatccgg 2701 ttgttgcaat cttacgtgga tgctgatgct gatgaaaact tttacacttg tgcatggacc 2761 tatgatagca atacgagcca tcctctgctg gctgtagctg gatctagagg cataattagg 2821 ataataaatc ctataacaat gcagtgtata aagcactatg ttggccatgg aaatgctatc 2881 aatgagctga aattccatcc aagagatcca aatcttctcc tgtcagtaag taaagatcat 2941 gctttacgat tatggaatat ccagacggac actctggtgg caatatttgg aggcgtagaa 3001 gggcacagag atgaagttct aagtgctgat tatgatcttt tgggtgaaaa aataatgtcc 3061 tgtggtatgg atcattctct taaactttgg aggatcaatt caaagagaat gatgaatgca 3121 attaaggaat cttatgatta taatccaaat aaaactaaca ggccatttat ttctcagaaa 3181 atccattttc ctgatttttc taccagagac atacatagga attatgttga ttgtgtgcga 3241 tggttaggcg atttgatact ttctaagagt ggccgtgcca ttttacattc ccaccagcaa 3301 tgtatgagag atccagtgtc tccgaatctt cgccagcatt tgtcttgtga aaatgccatt 3361 gtgtgctgga aacctggcaa gatggaagat gatatagata aaattaaacc cagtgaatct 3421 aatgtgacta ttcttgggcg atttgattac agccagtgtg acatttggta catgaggttt 3481 tctatggatt tctggcaaaa gatgcttgca ttgggcaatc aagttggcaa actttatgtt 3541 tgggatttag aagtagaaga tcctcataaa gccaaatgta caacactgac tcatcataaa 3601 tgtggtgctg ctattcgaca aaccagtttt agcagggata gcagcattct tatagctgtt 3661 tgtgatgatg ccagtatttg gcgctgggat cgacttcgag gatcctaccc atacgatgtt 3721 ccagattacg cttaggcggc cgcgaaggat ctgcgatcgc tccggtgccc gtcagtgggc 3781 agagcgcaca tcgcccacag tccccgagaa gttgggggga ggggtcggca attgaacggg 3841 tgcctagaga aggtggcgcg gggtaaactg ggaaagtgat gtcgtgtact ggctccgcct 3901 ttttcccgag ggtgggggag aaccgtatat aagtgcagta gtcgccgtga acgttctttt 3961 tcgcaacggg tttgccgcca gaacacagct gaagcttcga ggggctcgca tctctccttc 4021 acgcgcccgc cgccctacct gaggccgcca tccacgccgg ttgagtcgcg ttctgccgcc 4081 tcccgcctgt ggtgcctcct gaactgcgtc cgccgtctag gtaagtttaa agctcaggtc 4141 gagaccgggc ctttgtccgg cgctcccttg gagcctacct agactcagcc ggctctccac 4201 gctttgcctg accctgcttg ctcaactcta cgtctttgtt tcgttttctg ttctgcgccg 4261 ttacagatcc aagctgtgac cggcgcctac gctaggccac catggctgaa caagatggat 4321 tgcacgcagg ttctccggcc gcttgggtgg agaggctatt cggctatgac tgggcacaac 4381 agacaatcgg ctgctctgat gccgccgtgt tccggctgtc agcgcagggg cgcccggttc 4441 tttttgtcaa gaccgacctg tccggtgccc tgaatgaact gcaggacgag gcagcgcggc 4501 tatcgtggct ggccacgacg ggcgttcctt gcgcagctgt gctcgacgtt gtcactgaag 4561 cgggaaggga ctggctgcta ttgggcgaag tgccggggca ggatctcctg tcatctcacc 4621 ttgctcctgc cgagaaagta tccatcatgg ctgatgcaat gcggcggctg catacgcttg 4681 atccggctac ctgcccattc gaccaccaag cgaaacatcg catcgagcga gcacgtactc 4741 ggatggaagc cggtcttgtc gatcaggatg atctggacga agagcatcag gggctcgcgc 4801 cagccgaact gttcgccagg ctcaaggcgc gcatgcccga cggcgaggat ctcgtcgtga 4861 cccatggcga tgcctgcttg ccgaatatca tggtggaaaa tggccgcttt tctggattca 4921 tcgactgtgg ccggctgggt gtggcggacc gctatcagga catagcgttg gctacccgtg 4981 atattgctga agagcttggc ggcgaatggg ctgaccgctt cctcgtgctt tacggtatcg 5041 ccgctcccga ttcgcagcgc atcgccttct atcgccttct tgacgagttc ttctgagtcg 5101 acaatcaacc tctggattac aaaatttgtg aaagattgac tggtattctt aactatgttg 5161 ctccttttac gctatgtgga tacgctgctt taatgccttt gtatcatgct attgcttccc 5221 gtatggcttt cattttctcc tccttgtata aatcctggtt gctgtctctt tatgaggagt 5281 tgtggcccgt tgtcaggcaa cgtggcgtgg tgtgcactgt gtttgctgac gcaaccccca 5341 ctggttgggg cattgccacc acctgtcagc tcctttccgg gactttcgct ttccccctcc 5401 ctattgccac ggcggaactc atcgccgcct gccttgcccg ctgctggaca ggggctcggc 5461 tgttgggcac tgacaattcc gtggtgttgt cggggaaatc atcgtccttt ccttggctgc 5521 tcgcctgtgt tgccacctgg attctgcgcg ggacgtcctt ctgctacgtc ccttcggccc 5581 tcaatccagc ggaccttcct tcccgcggcc tgctgccggc tctgcggcct cttccgcgtc 5641 ttcgccttcg ccctcagacg agtcggatct ccctttgggc cgcctccccg cctggtacct 5701 ttaagaccaa tgacttacaa ggcagctgta gatcttagcc actttttaaa agaaaagggg 5761 ggactggaag ggctaattca ctcccaacga aaataagatc tgctttttgc ttgtactggg 5821 tctctctggt tagaccagat ctgagcctgg gagctctctg gctaactagg gaacccactg 5881 cttaagcctc aataaagctt gccttgagtg cttcaagtag tgtgtgcccg tctgttgtgt 5941 gactctggta actagagatc cctcagaccc ttttagtcag tgtggaaaat ctctagcagt 6001 agtagttcat gtcatcttat tattcagtat ttataacttg caaagaaatg aatatcagag 6061 agtgagagga acttgtttat tgcagcttat aatggttaca aataaagcaa tagcatcaca 6121 aatttcacaa ataaagcatt tttttcactg cattctagtt gtggtttgtc caaactcatc 6181 aatgtatctt atcatgtctg gctctagcta tcccgcccct aactccgccc agttccgccc 6241 attctccgcc ccatggctga ctaatttttt ttatttatgc agaggccgag gccgcctcgg 6301 cctctgagct attccagaag tagtgaggag gcttttttgg aggcctagac ttttgcagag 6361 acggcccaaa ttcgtaatca tggtcatagc tgtttcctgt gtgaaattgt tatccgctca 6421 caattccaca caacatacga gccggaagca taaagtgtaa agcctggggt gcctaatgag 6481 tgagctaact cacattaatt gcgttgcgct cactgcccgc tttccagtcg ggaaacctgt 6541 cgtgccagct gcattaatga atcggccaac gcgcggggag aggcggtttg cgtattgggc 6601 gctcttccgc ttcctcgctc actgactcgc tgcgctcggt cgttcggctg cggcgagcgg 6661 tatcagctca ctcaaaggcg gtaatacggt tatccacaga atcaggggat aacgcaggaa 6721 agaacatgtg agcaaaaggc cagcaaaagg ccaggaaccg taaaaaggcc gcgttgctgg 6781 cgtttttcca taggctccgc ccccctgacg agcatcacaa aaatcgacgc tcaagtcaga 6841 ggtggcgaaa cccgacagga ctataaagat accaggcgtt tccccctgga agctccctcg 6901 tgcgctctcc tgttccgacc ctgccgctta ccggatacct gtccgccttt ctcccttcgg 6961 gaagcgtggc gctttctcat agctcacgct gtaggtatct cagttcggtg taggtcgttc 7021 gctccaagct gggctgtgtg cacgaacccc ccgttcagcc cgaccgctgc gccttatccg 7081 gtaactatcg tcttgagtcc aacccggtaa gacacgactt atcgccactg gcagcagcca 7141 ctggtaacag gattagcaga gcgaggtatg taggcggtgc tacagagttc ttgaagtggt 7201 ggcctaacta cggctacact agaaggacag tatttggtat ctgcgctctg ctgaagccag 7261 ttaccttcgg aaaaagagtt ggtagctctt gatccggcaa acaaaccacc gctggtagcg 7321 gtggtttttt tgtttgcaag cagcagatta cgcgcagaaa aaaaggatct caagaagatc 7381 ctttgatctt ttctacgggg tctgacgctc agtggaacga aaactcacgt taagggattt 7441 tggtcatgag attatcaaaa aggatcttca cctagatcct tttaaattaa aaatgaagtt 7501 ttaaatcaat ctaaagtata tatgagtaaa cttggtctga cagttaccaa tgcttaatca 7561 gtgaggcacc tatctcagcg atctgtctat ttcgttcatc catagttgcc tgactccccg 7621 tcgtgtagat aactacgata cgggagggct taccatctgg ccccagtgct gcaatgatac 7681 cgcgagaccc acgctcaccg gctccagatt tatcagcaat aaaccagcca gccggaaggg 7741 ccgagcgcag aagtggtcct gcaactttat ccgcctccat ccagtctatt aattgttgcc 7801 gggaagctag agtaagtagt tcgccagtta atagtttgcg caacgttgtt gccattgcta 7861 caggcatcgt ggtgtcacgc tcgtcgtttg gtatggcttc attcagctcc ggttcccaac 7921 gatcaaggcg agttacatga tcccccatgt tgtgcaaaaa agcggttagc tccttcggtc 7981 ctccgatcgt tgtcagaagt aagttggccg cagtgttatc actcatggtt atggcagcac 8041 tgcataattc tcttactgtc atgccatccg taagatgctt ttctgtgact ggtgagtact 8101 caaccaagtc attctgagaa tagtgtatgc ggcgaccgag ttgctcttgc ccggcgtcaa 8161 tacgggataa taccgcgcca catagcagaa ctttaaaagt gctcatcatt ggaaaacgtt 8221 cttcggggcg aaaactctca aggatcttac cgctgttgag atccagttcg atgtaaccca 8281 ctcgtgcacc caactgatct tcagcatctt ttactttcac cagcgtttct gggtgagcaa 8341 aaacaggaag gcaaaatgcc gcaaaaaagg gaataagggc gacacggaaa tgttgaatac 8401 tcatactctt cctttttcaa tattattgaa gcatttatca gggttattgt ctcatgagcg 8461 gatacatatt tgaatgtatt tagaaaaata aacaaatagg ggttccgcgc acatttcccc 8521 gaaaagtgcc acctgacgtc taagaaacca ttattatcat gacattaacc tataaaaata 8581 ggcgtatcac gaggcccttt cgtctcgcgc gtttcggtga tgacggtgaa aacctctgac 8641 acatgcagct cccggagacg gtcacagctt gtctgtaagc ggatgccggg agcagacaag 8701 cccgtcaggg cgcgtcagcg ggtgttggcg ggtgtcgggg ctggcttaac tatgcggcat 8761 cagagcagat tgtactgaga gtgcaccata tgcggtgtga aataccgcac agatgcgtaa 8821 ggagaaaata ccgcatcagg cgccattcgc cattcaggct gcgcaactgt tgggaagggc 8881 gatcggtgcg ggcctcttcg ctattacgcc agctggcgaa agggggatgt gctgcaaggc 8941 gattaagttg ggtaacgcca gggttttccc agtcacgacg ttgtaaaacg acggccagtg 9001 ccaagctg //